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18 July 2023 – The Hindu

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All about Evolution

Context:

  • In 2016, scientists produced a genome that just had the bare minimal number of genes needed for life to exist. There was a general consensus that the organism’s chances of adapting to its environment were slim, which decreased the likelihood that it would evolve. However, a new analysis contends that this finding was false.

Artificial biology:

  • Our knowledge of the human genome and the variety of life forms around us has significantly enhanced as a result of the ability to sequence genomes and the expanded area of genomic study.
  • Synthetic biology is a brand-new area of study that has emerged as a result of the ability to concurrently build genome sequences (genome synthesis) and read them (genome sequencing).

What we are able to make:

  • A small bacterial genome was synthesised in an early endeavour in this field, but at the time, it was unable to be inserted back into the cell and given life.
  • In 2010, researchers succeeded in sequencing the modified genome of the free-living bacterium Mycoplasma mycoides, with a genomic size of around 1 million base pairs. The name of it is JCVI-syn1.0.
  • One of the first artificial life forms might be created with this genome and then inserted into a cell to reproduce.
  • This was the result of more than 15 years of labour.
  • This is also the reason that this project was regarded as one of humanity’s earliest attempts to construct life-forms using technology, science, and a fundamental understanding of the chemical mechanisms that control life.

About Syn3.B:

  • Scientists kept trying to alter the genomes of different organisms by carefully removing additional DNA from the Mycoplasma mycoides genome. Science published their research.
  • The “bare-minimum” genome and cell were designed by the researchers in an effort to support life and the potential for the genome to serve as the cornerstone of synthetic biology.
  • They were successful in removing about 45% of the organism’s genes to produce a minimum cell.
  • Particularly, the modified genome had just 473 genes and 5,31,000 base pairs. The nomenclature of this more recent updated synthetic version was JCVI-syn3.0.
  • Two new forms, JCVI-syn3.A and JCVI-syn3.B, were produced as a result of additional genetic modifications.
  • For instance, the genome of JCVI-syn3.B contained an extra genomic locus that permitted the splicing of novel gene segments and antigens.
  • This is necessary for the genome to connect in the human cell lineage known as HeLa that researchers frequently use in lab experiments.
  • As a result, human cells may be used to grow JCVI-syn3.B.
  • At the same time, it was widely accepted that the growing creature would have limited capacity for environmental adaptation, preventing it from evolving.
  • But a recent article in Nature suggests that this conclusion might not be accurate.

A simple genome develops:

  • Researchers looked into how a synthetic life form might evolve over time, particularly in scenarios where there wouldn’t be enough resources to support it, leading to the DNA either dying or changing.
  • The scientists developed a bacterial organism in the lab to better understand this, and they found that the life-form’s minimal synthetic genome had a high potential for genetic variety.
  • The minimum genome fared worse than the native, non-synthetic Mycoplasma, as anticipated by the scientists.
  • The discovery that the synthetic bacteria could perform noticeably better than the most primitive form of the organism that had not undergone evolution after 300 days shocked the scientists.

Its own course:

  • According to the study, synthetic life forms might be able to autonomously evolve in order to adapt to their surroundings.
  • Natural adaptation was largely unaffected by genome reduction.
  • Additionally, the researchers were able to pinpoint particular genes and areas of the genome that have collected genetic variations related to the adaptation by using genome-sequencing.
  • As indicated by the multiple genomic regions and genes where the genetic variations accumulated during the process of adaptation, they also discovered that the minimal genome’s adaptation took obviously unique phases and courses from that of the native/non-adapted organism.

Moving forward:

  • The discoveries have significant implications for both the practical application of synthetic genomes for the mass manufacturing of chemicals and biologicals as well as our understanding of the natural evolutionary processes of synthetic life.
  • Understanding how viruses elude immune systems and how antibiotic resistance develops from an understanding of how organisms evolve opens up new possibilities for preventing or preparing for these problems.

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